Heritage has been a crucial part of Indian civilization. Conservation of heritage, be it natural or cultural, has been taken up before the Independence but this day has not been without challenges. Lonar, famous for its meteoritic impact crater, also has multiple stone temples in the vicinity of the lake, which gives it sufficient cultural and religious value. The crater is not only of geological importance but culturally significant as well. Although many studies have already been conducted in the fields of geology and microbiology, no proper research has been undertaken to study and explore its cultural aspects. Through this study, a multi-disciplinary understanding of craters’ natural and cultural layers has been developed, through background research and field surveys. The study envisions challenges and direction in the conservation process of the cultural and natural heritage together.